STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_17930Aerotolerance protein BatD; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)    
Predicted Functional Partners:
VM_17925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.969
VM_17910
Cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
VM_17920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
VM_17915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.938
VM_17905
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
VM_10035
MoxR protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.769
VM_10045
Aerotolerance regulator BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.759
VM_17935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.526
VM_03740
TIGR03503 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.525
cmoB
tRNA 5-methoxyuridine(34) synthase CmoB; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
     0.467
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.