Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VM_18055Spindolin; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)    
Predicted Functional Partners:
VM_05200
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.934
VM_16830
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.933
VM_09485
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.863
VM_16360
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 
 
 0.840
VM_03800
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.779
gbpA
N-acetylglucosamine-binding protein A; Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin. Belongs to the GbpA family.
 
  
 0.756
VM_06690
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.721
VM_18925
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.719
VM_00145
Sporulation control protein Spo0M; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
VM_16915
Peptidase M4; Extracellular zinc metalloprotease.
   
  
 0.632
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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