Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
VM_18275Endo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)    
Predicted Functional Partners:
VM_18280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.685
VM_05555
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.614
VM_05200
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.599
VM_00725
TonB-dependent vitamin B12 receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.584
VM_17540
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.510
VM_10490
Aspartate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.495
VM_06750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
VM_18840
Protease; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
   0.415
VM_12985
YiuR; outer membrane siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.412
VM_18290
Cobinamide adenolsyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.410
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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