STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_18320Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)    
Predicted Functional Partners:
VM_18315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
VM_06210
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.730
VM_16585
Anaerobic C4-dicarboxylate transporter DcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
VM_09090
DNA transformation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
VM_08250
Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
VM_11355
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
VM_00135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.460
VM_01480
C4-dicarboxylate ABC transporter; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
     0.449
VM_13925
Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
VM_20140
Putative heme utilization radical SAM enzyme HutW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.