STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_18840Protease; Degrades oligopeptides; Belongs to the peptidase S41B family. (1085 aa)    
Predicted Functional Partners:
VM_11945
Lipoprotein NlpI; May be involved in cell division.
    
 
 0.656
VM_17725
Anaerobic sulfatase maturase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.586
VM_06100
Anaerobic sulfatase maturase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.571
VM_18845
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.530
VM_18850
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.519
VM_05485
LruC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.504
VM_06750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.504
VM_13460
MSHA biogenesis protein MshQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.504
VM_18275
Endo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.504
oadA
Oxaloacetate decarboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.499
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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