Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VM_03405 | VM_09890 | VM_03405 | VM_09890 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
| VM_03405 | VM_19270 | VM_03405 | VM_19270 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.512 |
| VM_05485 | VM_09895 | VM_05485 | VM_09895 | LruC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.439 |
| VM_05485 | VM_19270 | VM_05485 | VM_19270 | LruC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.485 |
| VM_06100 | VM_19270 | VM_06100 | VM_19270 | Anaerobic sulfatase maturase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.485 |
| VM_09890 | VM_03405 | VM_09890 | VM_03405 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.659 |
| VM_09890 | VM_09895 | VM_09890 | VM_09895 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.933 |
| VM_09890 | VM_19270 | VM_09890 | VM_19270 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.512 |
| VM_09890 | rpoE | VM_09890 | VM_02625 | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.602 |
| VM_09895 | VM_05485 | VM_09895 | VM_05485 | Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | LruC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.439 |
| VM_09895 | VM_09890 | VM_09895 | VM_09890 | Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.933 |
| VM_09895 | VM_19270 | VM_09895 | VM_19270 | Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.512 |
| VM_19270 | VM_03405 | VM_19270 | VM_03405 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.512 |
| VM_19270 | VM_05485 | VM_19270 | VM_05485 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | LruC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.485 |
| VM_19270 | VM_06100 | VM_19270 | VM_06100 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anaerobic sulfatase maturase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.485 |
| VM_19270 | VM_09890 | VM_19270 | VM_09890 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.512 |
| VM_19270 | VM_09895 | VM_19270 | VM_09895 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.512 |
| VM_19270 | VM_19275 | VM_19270 | VM_19275 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.952 |
| VM_19270 | VM_19280 | VM_19270 | VM_19280 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Syringolide biosynthetic protein AvrD1; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.506 |
| VM_19270 | VM_19285 | VM_19270 | VM_19285 | Malate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.511 |
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