STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potEPutrescine-ornithine antiporter; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family. (439 aa)    
Predicted Functional Partners:
speF
Ornithine decarboxylase SpeF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
treC
Alpha,alpha-phosphotrehalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.691
VM_20330
Chemotaxis protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.691
VM_15795
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
VM_14230
Lysine decarboxylase LdcC; Constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.549
VM_16585
Anaerobic C4-dicarboxylate transporter DcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
VM_18585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.534
trpF
Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TrpC family.
    
 
 0.470
VM_06830
Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.442
VM_06210
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.