STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_20365ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
VM_20370
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
VM_11720
Two-component system response regulator YehT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
VM_20355
Outer membrane lipoprotein-sorting protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.821
VM_20360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.798
VM_20350
ABC transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.796
VM_12160
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.626
VM_16270
Putative 2-aminoethylphosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.626
VM_16655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.626
VM_16855
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.626
VM_01110
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.576
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.