STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VM_20685Lipolytic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)    
Predicted Functional Partners:
VM_08625
Ubiquitin--protein ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.653
VM_05200
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.538
VM_06750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.523
VM_17595
Thermolabile hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.514
VM_10470
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.485
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
      
 0.480
VM_12125
Chitobiase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
VM_18275
Endo-1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.405
Your Current Organism:
Vibrio mimicus
NCBI taxonomy Id: 674
Other names: ATCC 33653, CAIM 602, CCUG 13624, CIP 101888, DSM 19130, LMG 7896, LMG:7896, NCTC 11435, V. mimicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.