STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN38476.1Protocatechuate 4,5-dioxygenase subunit beta. (286 aa)    
Predicted Functional Partners:
AMN45393.1
Protocatechuate 4,5-dioxygenase subunit alpha.
 
 0.999
AMN38475.1
Protocatechuate 4,5-dioxygenase subunit alpha.
 
  
 0.995
AMN45391.1
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
  
 0.977
AMN42762.1
p-Hydroxybenzoate hydroxylase, FAD dependent monooxygenase.
 
  
 0.952
AMN38536.1
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.951
AMN45395.1
Amidohydrolase 2.
 
  
 0.922
AMN40426.1
Amidohydrolase.
 
  
 0.908
AMN45392.1
Protocatechuate 4,5-dioxygenase subunit beta.
  
  
 
0.905
AMN39229.1
Transcriptional regulator, GntR family/amidohydrolase family protein.
 
  
 0.902
AMN39416.1
3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; Belongs to the UbiD family.
     
  0.900
Your Current Organism:
Rhodoplanes sp. Z2YC6860
NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.