STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN40031.1Periplasmic ligand-binding sensor protein. (288 aa)    
Predicted Functional Partners:
AMN40030.1
Cellobiose phosphorylase.
 
     0.661
AMN42786.1
RNA-binding region RNP-1 protein.
  
     0.580
AMN45155.1
Hypothetical protein.
  
     0.574
AMN38971.1
Hypothetical protein.
  
     0.565
AMN40857.1
Methyltransferase, YaeB/AF_0241 family.
  
     0.542
AMN38972.1
Hypothetical protein.
  
     0.532
AMN39152.1
Hypothetical protein.
  
     0.532
AMN38885.1
TRAP transporter solute receptor TAXI family protein.
  
     0.515
AMN44563.1
AsmA family protein.
  
     0.513
AMN44869.1
G-D-S-L family lipolytic protein.
  
     0.484
Your Current Organism:
Rhodoplanes sp. Z2YC6860
NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.