STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN40388.1ABC transporter substrate-binding protein. (326 aa)    
Predicted Functional Partners:
AMN40341.1
Extra-cytoplasmic solute receptor family protein.
  
     0.766
AMN40387.1
Extra-cytoplasmic solute receptor family protein.
 
    
0.720
AMN44932.1
TTT family tricarboxylate transporter, receptor protein.
  
     0.653
AMN40582.1
Hypothetical protein.
  
     0.600
AMN41462.1
Extra-cytoplasmic solute receptor.
  
     0.571
AMN40385.1
Extra-cytoplasmic solute receptor family protein.
 
    
0.550
AMN41399.1
Tripartite tricarboxylate transporter family receptor.
  
     0.525
AMN40384.1
Extra-cytoplasmic solute receptor family protein.
 
    
0.475
AMN44916.1
Tripartite tricarboxylate transporter family receptor.
  
     0.464
AMN39581.1
Efflux RND transporter protein.
  
     0.463
Your Current Organism:
Rhodoplanes sp. Z2YC6860
NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.