Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMN38841.1 | AMN42287.1 | RHPLAN_03760 | RHPLAN_38550 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Chemotaxis protein methyltransferase CheR. | 0.415 |
| AMN38841.1 | AMN42398.1 | RHPLAN_03760 | RHPLAN_39660 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Nitrogen regulation protein NtrB. | 0.683 |
| AMN38841.1 | AMN44333.1 | RHPLAN_03760 | RHPLAN_59220 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase CheA. | 0.428 |
| AMN38841.1 | AMN45326.1 | RHPLAN_03760 | RHPLAN_69200 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component hybrid sensor and regulator. | 0.526 |
| AMN38841.1 | flhA | RHPLAN_03760 | RHPLAN_59030 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.456 |
| AMN38841.1 | ntrC | RHPLAN_03760 | RHPLAN_39670 | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Nitrogen metabolism transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.803 |
| AMN42287.1 | AMN38841.1 | RHPLAN_38550 | RHPLAN_03760 | Chemotaxis protein methyltransferase CheR. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.415 |
| AMN42287.1 | AMN42398.1 | RHPLAN_38550 | RHPLAN_39660 | Chemotaxis protein methyltransferase CheR. | Nitrogen regulation protein NtrB. | 0.475 |
| AMN42287.1 | AMN44296.1 | RHPLAN_38550 | RHPLAN_58850 | Chemotaxis protein methyltransferase CheR. | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. | 0.926 |
| AMN42287.1 | AMN44333.1 | RHPLAN_38550 | RHPLAN_59220 | Chemotaxis protein methyltransferase CheR. | Signal transduction histidine kinase CheA. | 0.998 |
| AMN42287.1 | AMN45326.1 | RHPLAN_38550 | RHPLAN_69200 | Chemotaxis protein methyltransferase CheR. | Two-component hybrid sensor and regulator. | 0.966 |
| AMN42287.1 | flhA | RHPLAN_38550 | RHPLAN_59030 | Chemotaxis protein methyltransferase CheR. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.924 |
| AMN42287.1 | ntrC | RHPLAN_38550 | RHPLAN_39670 | Chemotaxis protein methyltransferase CheR. | Nitrogen metabolism transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.709 |
| AMN42397.1 | AMN42398.1 | RHPLAN_39650 | RHPLAN_39660 | Dihydrouridine synthase TIM-barrel protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen regulation protein NtrB. | 0.890 |
| AMN42397.1 | AMN42400.1 | RHPLAN_39650 | RHPLAN_39680 | Dihydrouridine synthase TIM-barrel protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen regulation protein NtrY. | 0.496 |
| AMN42397.1 | ntrC | RHPLAN_39650 | RHPLAN_39670 | Dihydrouridine synthase TIM-barrel protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen metabolism transcriptional regulator NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.718 |
| AMN42398.1 | AMN38841.1 | RHPLAN_39660 | RHPLAN_03760 | Nitrogen regulation protein NtrB. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.683 |
| AMN42398.1 | AMN42287.1 | RHPLAN_39660 | RHPLAN_38550 | Nitrogen regulation protein NtrB. | Chemotaxis protein methyltransferase CheR. | 0.475 |
| AMN42398.1 | AMN42397.1 | RHPLAN_39660 | RHPLAN_39650 | Nitrogen regulation protein NtrB. | Dihydrouridine synthase TIM-barrel protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.890 |
| AMN42398.1 | AMN42400.1 | RHPLAN_39660 | RHPLAN_39680 | Nitrogen regulation protein NtrB. | Nitrogen regulation protein NtrY. | 0.573 |
page 1 of 4