STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMN42651.1Hypothetical protein. (390 aa)    
Predicted Functional Partners:
AMN42707.1
Nitrogen-fixing NifU domain-containing protein.
   
    0.661
AMN45475.1
LVIVD repeat-containing protein.
  
     0.632
AMN40584.1
Hypothetical protein.
  
     0.550
AMN39692.1
Tetratricopeptide-repeat containing protein.
  
     0.533
AMN45410.1
TRAP dicarboxylate family transporter subunit DctQ.
  
     0.530
AMN45459.1
Hypothetical protein.
  
     0.527
AMN41717.1
Fe-S oxidoreductase.
  
     0.523
AMN45460.1
Tetratricopeptide TPR_2 peptide.
  
     0.515
AMN40345.1
Radical SAM family protein.
  
     0.514
AMN39693.1
Hypothetical protein.
  
     0.504
Your Current Organism:
Rhodoplanes sp. Z2YC6860
NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.