Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMN42768.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
AMN42769.1
Short-chain dehydrogenase/reductase SDR.
       0.675
AMN42770.1
Alpha/beta hydrolase protein.
       0.675
AMN42771.1
Esterase/lipase/thioesterase domain-containing protein.
       0.580
AMN42965.1
O-methyltransferase involved in polyketide biosynthesis.
  
     0.454
AMN40159.1
Hypothetical protein.
 
     0.441
AMN42772.1
Zn-ribbon-like motif-containing protein.
       0.411
Your Current Organism:
Rhodoplanes sp. Z2YC6860
NCBI taxonomy Id: 674703
Other names: R. sp. Z2-YC6860, Rhodoplanes sp. Z2-YC6860
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