N1PMT6_DOTSN protein (Dothistroma septosporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N1PMT6_DOTSN

Uncharacterized protein. (477 aa)

Predicted Functional Partners:

N1PSF2_DOTSN

0.892

N1PSI1_DOTSN

0.892

M2WMJ1_DOTSN

0.812

M2Y1M8_DOTSN

0.789

N1PI71_DOTSN

0.789

N1PRC7_DOTSN

0.789

N1PRX0_DOTSN

0.789

N1PW89_DOTSN

0.789

M2YKP2_DOTSN

0.772

N1PSC9_DOTSN

0.764

Your Current Organism:

Dothistroma septosporum

NCBI taxonomy Id: 675120
Other names: D. septosporum NZE10, Dothistroma septosporum NZE10, Mycosphaerella pini NZE10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2WMJ1_DOTSN	M2Y1M8_DOTSN	M2WMJ1	M2Y1M8	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.779
M2WMJ1_DOTSN	N1PI71_DOTSN	M2WMJ1	N1PI71	Uncharacterized protein; Belongs to the DEAD box helicase family.	MIF4G domain-containing protein.	0.792
M2WMJ1_DOTSN	N1PMT6_DOTSN	M2WMJ1	N1PMT6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.812
M2WMJ1_DOTSN	N1PRC7_DOTSN	M2WMJ1	N1PRC7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Glycosyltransferase family 69 protein.	0.792
M2WMJ1_DOTSN	N1PRX0_DOTSN	M2WMJ1	N1PRX0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.779
M2WMJ1_DOTSN	N1PSC9_DOTSN	M2WMJ1	N1PSC9	Uncharacterized protein; Belongs to the DEAD box helicase family.	W2 domain-containing protein.	0.720
M2WMJ1_DOTSN	N1PSF2_DOTSN	M2WMJ1	N1PSF2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.844
M2WMJ1_DOTSN	N1PSI1_DOTSN	M2WMJ1	N1PSI1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.872
M2WMJ1_DOTSN	N1PW89_DOTSN	M2WMJ1	N1PW89	Uncharacterized protein; Belongs to the DEAD box helicase family.	Glycosyltransferase family 69 protein.	0.792
M2Y1M8_DOTSN	M2WMJ1_DOTSN	M2Y1M8	M2WMJ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.779
M2Y1M8_DOTSN	N1PMT6_DOTSN	M2Y1M8	N1PMT6	Uncharacterized protein.	Uncharacterized protein.	0.789
M2Y1M8_DOTSN	N1PSC9_DOTSN	M2Y1M8	N1PSC9	Uncharacterized protein.	W2 domain-containing protein.	0.797
M2Y1M8_DOTSN	N1PSF2_DOTSN	M2Y1M8	N1PSF2	Uncharacterized protein.	Uncharacterized protein.	0.837
M2Y1M8_DOTSN	N1PSI1_DOTSN	M2Y1M8	N1PSI1	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.837
M2YKP2_DOTSN	N1PMT6_DOTSN	M2YKP2	N1PMT6	Peptidylprolyl isomerase.	Uncharacterized protein.	0.772
N1PI71_DOTSN	M2WMJ1_DOTSN	N1PI71	M2WMJ1	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.792
N1PI71_DOTSN	N1PMT6_DOTSN	N1PI71	N1PMT6	MIF4G domain-containing protein.	Uncharacterized protein.	0.789
N1PI71_DOTSN	N1PSC9_DOTSN	N1PI71	N1PSC9	MIF4G domain-containing protein.	W2 domain-containing protein.	0.830
N1PI71_DOTSN	N1PSF2_DOTSN	N1PI71	N1PSF2	MIF4G domain-containing protein.	Uncharacterized protein.	0.837
N1PI71_DOTSN	N1PSI1_DOTSN	N1PI71	N1PSI1	MIF4G domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.946