node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EQU24_12940 | EQU24_12945 | GCA_000341735_00453 | GCA_000341735_00452 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein. | 0.814 |
EQU24_12940 | rluD | GCA_000341735_00453 | GCA_000341735_00443 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.765 |
EQU24_12940 | rplB | GCA_000341735_00453 | GCA_000341735_02228 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.703 |
EQU24_12940 | rplC | GCA_000341735_00453 | GCA_000341735_02231 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.710 |
EQU24_12940 | rplE | GCA_000341735_00453 | GCA_000341735_02219 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.703 |
EQU24_12940 | rplP | GCA_000341735_00453 | GCA_000341735_02224 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.695 |
EQU24_12940 | rplS | GCA_000341735_00453 | GCA_000341735_03928 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.703 |
EQU24_12940 | rplW | GCA_000341735_00453 | GCA_000341735_02229 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.711 |
EQU24_12940 | rplY | GCA_000341735_00453 | GCA_000341735_02250 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.709 |
EQU24_12940 | rpmG | GCA_000341735_00453 | GCA_000341735_03225 | Unannotated protein; Belongs to the UPF0307 family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. | 0.759 |
EQU24_12945 | EQU24_12940 | GCA_000341735_00452 | GCA_000341735_00453 | Unannotated protein. | Unannotated protein; Belongs to the UPF0307 family. | 0.814 |
rluD | EQU24_12940 | GCA_000341735_00443 | GCA_000341735_00453 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Belongs to the UPF0307 family. | 0.765 |
rluD | rplB | GCA_000341735_00443 | GCA_000341735_02228 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.661 |
rluD | rplC | GCA_000341735_00443 | GCA_000341735_02231 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.831 |
rluD | rplE | GCA_000341735_00443 | GCA_000341735_02219 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.739 |
rluD | rplP | GCA_000341735_00443 | GCA_000341735_02224 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.670 |
rluD | rplS | GCA_000341735_00443 | GCA_000341735_03928 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.769 |
rluD | rplW | GCA_000341735_00443 | GCA_000341735_02229 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.715 |
rluD | rplY | GCA_000341735_00443 | GCA_000341735_02250 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.681 |
rluD | rpmG | GCA_000341735_00443 | GCA_000341735_03225 | Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. | 0.674 |