Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EQU24_02220 | EQU24_12800 | GCA_000341735_02558 | GCA_000341735_00484 | Unannotated protein; Belongs to the ParB family. | Unannotated protein. | 0.852 |
EQU24_02220 | dnaA | GCA_000341735_02558 | GCA_000341735_03000 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.513 |
EQU24_05300 | EQU24_12800 | GCA_000341735_01950 | GCA_000341735_00484 | Unannotated protein. | Unannotated protein. | 0.515 |
EQU24_12790 | EQU24_12795 | GCA_000341735_00486 | GCA_000341735_00485 | Unannotated protein. | Unannotated protein. | 0.752 |
EQU24_12790 | EQU24_12800 | GCA_000341735_00486 | GCA_000341735_00484 | Unannotated protein. | Unannotated protein. | 0.514 |
EQU24_12795 | EQU24_12790 | GCA_000341735_00485 | GCA_000341735_00486 | Unannotated protein. | Unannotated protein. | 0.752 |
EQU24_12795 | EQU24_12800 | GCA_000341735_00485 | GCA_000341735_00484 | Unannotated protein. | Unannotated protein. | 0.800 |
EQU24_12800 | EQU24_02220 | GCA_000341735_00484 | GCA_000341735_02558 | Unannotated protein. | Unannotated protein; Belongs to the ParB family. | 0.852 |
EQU24_12800 | EQU24_05300 | GCA_000341735_00484 | GCA_000341735_01950 | Unannotated protein. | Unannotated protein. | 0.515 |
EQU24_12800 | EQU24_12790 | GCA_000341735_00484 | GCA_000341735_00486 | Unannotated protein. | Unannotated protein. | 0.514 |
EQU24_12800 | EQU24_12795 | GCA_000341735_00484 | GCA_000341735_00485 | Unannotated protein. | Unannotated protein. | 0.800 |
EQU24_12800 | EQU24_16405 | GCA_000341735_00484 | GCA_000341735_04172 | Unannotated protein. | Unannotated protein; Belongs to the ParB family. | 0.841 |
EQU24_12800 | GCA_000341735_04462 | GCA_000341735_00484 | GCA_000341735_04462 | Unannotated protein. | Unannotated protein. | 0.831 |
EQU24_12800 | GCA_000341735_04484 | GCA_000341735_00484 | GCA_000341735_04484 | Unannotated protein. | Unannotated protein. | 0.778 |
EQU24_12800 | birA | GCA_000341735_00484 | GCA_000341735_00773 | Unannotated protein. | Unannotated protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.456 |
EQU24_12800 | dnaA | GCA_000341735_00484 | GCA_000341735_03000 | Unannotated protein. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.496 |
EQU24_12800 | ftsZ | GCA_000341735_00484 | GCA_000341735_03501 | Unannotated protein. | Unannotated protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.459 |
EQU24_16405 | EQU24_12800 | GCA_000341735_04172 | GCA_000341735_00484 | Unannotated protein; Belongs to the ParB family. | Unannotated protein. | 0.841 |
EQU24_16405 | dnaA | GCA_000341735_04172 | GCA_000341735_03000 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.423 |
GCA_000341735_04462 | EQU24_12800 | GCA_000341735_04462 | GCA_000341735_00484 | Unannotated protein. | Unannotated protein. | 0.831 |
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