STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_00064Unannotated protein. (432 aa)    
Predicted Functional Partners:
GCA_000427385_00065
Unannotated protein.
 0.999
GCA_000427385_00061
Unannotated protein.
 
  
 0.994
GCA_000427385_00060
Unannotated protein.
 
     0.933
GCA_000427385_00057
Unannotated protein.
 
 
 0.874
GCA_000427385_00022
Unannotated protein.
  
    0.847
GCA_000427385_01639
Unannotated protein.
    
 0.779
GCA_000427385_03368
Unannotated protein.
    
 0.779
GCA_000427385_00063
Unannotated protein.
       0.730
GCA_000427385_00062
Unannotated protein.
       0.718
GCA_000427385_01540
Unannotated protein.
    
  0.715
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.