STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_00508Unannotated protein. (422 aa)    
Predicted Functional Partners:
GCA_000427385_00507
Unannotated protein.
 
  
 0.940
GCA_000427385_00568
Unannotated protein.
 
 
 0.889
GCA_000427385_00499
Unannotated protein.
  
 
  0.832
GCA_000427385_01209
Unannotated protein.
  
 
  0.831
GCA_000427385_00510
Unannotated protein.
 
    0.817
GCA_000427385_01088
Unannotated protein.
  
 
  0.812
GCA_000427385_00506
Unannotated protein.
 
    0.751
GCA_000427385_00578
Unannotated protein.
 
    0.743
GCA_000427385_02194
Unannotated protein.
  
 
 0.625
GCA_000427385_00574
Unannotated protein.
 
    0.600
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.