STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_01138Unannotated protein. (574 aa)    
Predicted Functional Partners:
GCA_000427385_02700
Unannotated protein.
  
 0.951
GCA_000427385_00520
Unannotated protein.
   
 0.927
GCA_000427385_02809
Unannotated protein.
   
 0.927
GCA_000427385_00147
Unannotated protein.
    
 0.909
GCA_000427385_03289
Unannotated protein.
    
 0.891
GCA_000427385_04258
Unannotated protein.
  
 
 0.868
GCA_000427385_00956
Unannotated protein.
   
 0.842
GCA_000427385_04130
Unannotated protein.
   
 0.842
GCA_000427385_01303
Unannotated protein.
  
 
 0.795
GCA_000427385_00309
Unannotated protein.
    
 0.778
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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