STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_01241Unannotated protein. (235 aa)    
Predicted Functional Partners:
GCA_000427385_00445
Unannotated protein.
 
 
  0.977
GCA_000427385_01242
Unannotated protein.
 
 
  0.954
GCA_000427385_00628
Unannotated protein.
 
 
  0.934
GCA_000427385_00627
Unannotated protein.
  
 
 
0.901
GCA_000427385_01688
Unannotated protein.
 
  0.866
GCA_000427385_03087
Unannotated protein.
 
   
  0.864
GCA_000427385_02489
Unannotated protein.
 
   
  0.857
GCA_000427385_01716
Unannotated protein.
  
 0.825
GCA_000427385_00878
Unannotated protein.
 
  
 
0.823
GCA_000427385_02979
Unannotated protein.
  
  
  0.800
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.