STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_01345Unannotated protein. (304 aa)    
Predicted Functional Partners:
GCA_000427385_04129
Unannotated protein.
 
 
 0.985
GCA_000427385_01200
Unannotated protein.
 
  
 0.983
GCA_000427385_00803
Unannotated protein.
 
  
 0.979
GCA_000427385_01344
Unannotated protein.
 
  
 0.970
GCA_000427385_01201
Unannotated protein.
   
 0.952
GCA_000427385_01343
Unannotated protein.
 
  
 0.924
GCA_000427385_00806
Unannotated protein.
 
   
 0.871
GCA_000427385_04308
Unannotated protein.
 
   
 0.869
GCA_000427385_02192
Unannotated protein.
 
   
 0.867
GCA_000427385_01027
Unannotated protein.
 
   
 0.855
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.