STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_02434Unannotated protein. (270 aa)    
Predicted Functional Partners:
GCA_000427385_02435
Unannotated protein.
 
 
 0.958
GCA_000427385_01016
Unannotated protein.
  
  
  0.894
GCA_000427385_00391
Unannotated protein.
  
  
  0.893
GCA_000427385_02489
Unannotated protein.
     
 0.878
GCA_000427385_00023
Unannotated protein.
   
 0.869
GCA_000427385_03749
Unannotated protein.
   
 0.857
GCA_000427385_02661
Unannotated protein.
 
  
  0.855
GCA_000427385_01017
Unannotated protein.
  
  
  0.853
GCA_000427385_00260
Unannotated protein.
   
 0.842
GCA_000427385_00677
Unannotated protein.
   
 0.842
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.