STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_02799Unannotated protein. (195 aa)    
Predicted Functional Partners:
GCA_000427385_04419
Unannotated protein.
    
 0.778
GCA_000427385_00336
Unannotated protein.
     
 0.771
GCA_000427385_02796
Unannotated protein.
       0.661
GCA_000427385_02797
Unannotated protein.
       0.661
GCA_000427385_02798
Unannotated protein.
       0.661
GCA_000427385_02254
Unannotated protein.
    
 0.607
GCA_000427385_04374
Unannotated protein.
     
 0.516
GCA_000427385_01220
Unannotated protein.
    
 0.506
GCA_000427385_04181
Unannotated protein.
     
 0.495
GCA_000427385_04209
Unannotated protein.
     
 0.495
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.