STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_03918Unannotated protein. (214 aa)    
Predicted Functional Partners:
GCA_000427385_02366
Unannotated protein.
     
 0.881
GCA_000427385_00254
Unannotated protein.
  
  
0.874
GCA_000427385_03920
Unannotated protein.
  
    0.775
GCA_000427385_03919
Unannotated protein.
       0.773
GCA_000427385_03740
Unannotated protein.
  
    0.762
GCA_000427385_01767
Unannotated protein.
  
 0.724
GCA_000427385_03969
Unannotated protein.
  
 0.711
GCA_000427385_03880
Unannotated protein.
   
 0.695
GCA_000427385_01358
Unannotated protein.
  
  0.687
GCA_000427385_02534
Unannotated protein.
  
 
0.661
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.