STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427385_04398Unannotated protein. (407 aa)    
Predicted Functional Partners:
GCA_000427385_00920
Unannotated protein.
    
 0.760
GCA_000427385_04397
Unannotated protein.
 
 
  0.755
GCA_000427385_01530
Unannotated protein.
    
   0.624
GCA_000427385_01587
Unannotated protein.
    
   0.624
GCA_000427385_03734
Unannotated protein.
    
   0.624
GCA_000427385_04380
Unannotated protein.
    
   0.624
GCA_000427385_00820
Unannotated protein.
 
 
  0.593
GCA_000427385_04399
Unannotated protein.
 
     0.584
GCA_000427385_03928
Unannotated protein.
  
    0.532
GCA_000427385_04400
Unannotated protein.
 
     0.521
Your Current Organism:
Methylocaldum szegediense
NCBI taxonomy Id: 675524
Other names: M. szegediense O-12, Methylocaldum sp. O-12, Methylocaldum szegediense O-12, Methylocaldum szegediense str. O-12, Methylocaldum szegediense strain O-12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.