STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0066KEGG: nml:Namu_4693 winged helix family transcriptional regulator; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; NB-ARC; SMART: Signal transduction response regulator, C-terminal; ATPase, AAA+ type, core. (935 aa)    
Predicted Functional Partners:
Psed_0065
PFAM: FAD linked oxidase, N-terminal; Berberine/berberine-like; KEGG: sgr:SGR_4241 putative FAD-dependent oxygenase.
 
     0.601
Psed_0068
KEGG: mex:Mext_3068 monooxygenase FAD-binding; PFAM: Monooxygenase, FAD-binding.
 
     0.579
Psed_1170
Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain; KEGG: cwo:Cwoe_4257 transcriptional regulator, SARP family.
 
  
 0.517
Psed_0067
PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: nfa:nfa32860 hypothetical protein.
       0.512
Psed_4140
Transcriptional regulator, winged helix family; KEGG: sro:Sros_1038 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.
 
  
0.469
Psed_6325
Transcriptional regulator, winged helix family; KEGG: nca:Noca_4962 transcriptional activator domain-containing protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal.
 
  
0.469
Psed_0846
KEGG: cai:Caci_4666 transcriptional regulator, winged helix family; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; Tetratricopeptide TPR-4; SMART: Signal transduction response regulator, C-terminal.
 
  
0.463
Psed_0700
KEGG: rxy:Rxyl_2946 LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
 
  
0.457
Psed_4354
Rhodanese-like protein; KEGG: rha:RHA1_ro11220 ArsR family transcriptional regulator; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: Rhodanese-like; HTH transcriptional regulator, ArsR.
   
    0.449
Psed_2415
KEGG: kra:Krad_0228 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.
  
    0.445
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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