STRINGSTRING
Psed_0085 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0085" - Chemotaxis protein CheB in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0085Chemotaxis protein CheB (335 aa)    
Predicted Functional Partners:
Psed_2312
Chemotaxis protein CheR (612 aa)
 
  0.996
Psed_4731
RNA polymerase sigma 28 subunit FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (429 aa)
 
   
  0.881
Psed_2311
Chemotaxis protein CheB (352 aa)
   
   
 
0.843
Psed_6430
Multi-sensor hybrid histidine kinase (1025 aa)
   
  0.739
Psed_0436
Response regulator receiver protein (147 aa)
 
   
  0.736
Psed_2869
Pyruvate kinase (472 aa)
 
 
 
  0.717
Psed_6031
Response regulator receiver protein (149 aa)
 
   
  0.680
Psed_0434
Response regulator receiver modulated serine phosphatase (397 aa)
 
   
  0.672
Psed_0435
Histidine kinase (596 aa)
   
  0.666
Psed_2324
Multi-sensor signal transduction histidine kinase (1859 aa)
 
   
  0.657
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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