Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0100L-iditol 2-dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: rxy:Rxyl_2379 zinc-binding alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase. (363 aa)    
Predicted Functional Partners:
Psed_2594
L-iditol 2-dehydrogenase; KEGG: ttr:Tter_2008 alcohol dehydrogenase GroES domain protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal.
  
  
 
0.928
Psed_5017
Fructokinase; KEGG: saq:Sare_3490 ribokinase-like domain-containing protein; PFAM: Carbohydrate/purine kinase; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.911
xylA
TIGRFAM: Xylose isomerase, actinobacteria; HAMAP: Xylose isomerase; KEGG: ace:Acel_2064 xylose isomerase; PFAM: Xylose isomerase, TIM barrel domain; Belongs to the xylose isomerase family.
     
 0.906
Psed_1848
TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: sro:Sros_0655 GDP-mannose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal.
  
 
 0.818
Psed_0101
MmgE/PrpD family protein; PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B1168 MmgE/PrpD family protein.
       0.773
Psed_0099
PFAM: MaoC-like dehydratase; KEGG: nca:Noca_4064 dehydratase.
  
    0.513
Psed_2070
NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: acp:A2cp1_3027 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase.
 
 
0.456
Psed_0131
KEGG: gob:Gobs_1750 alcohol dehydrogenase GroES domain-containing protein; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase.
 
 
0.455
Psed_3739
NADPH:quinone reductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: mxa:MXAN_4266 zinc-binding dehydrogenase family oxidoreductase; SMART: Polyketide synthase, enoylreductase.
 
 
0.448
Psed_4985
TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: sro:Sros_4103 putative alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase.
 
 
0.430
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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