STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0160PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tcu:Tcur_0098 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (311 aa)    
Predicted Functional Partners:
Psed_2926
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; KEGG: mjl:Mjls_1207 dehydratase; PFAM: MaoC-like dehydratase.
 0.953
Psed_0219
KEGG: cai:Caci_6492 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR.
  
     0.763
Psed_6331
Transcriptional regulator, LuxR family; PFAM: Short-chain dehydrogenase/reductase SDR; Transcription regulator LuxR, C-terminal; Tetratricopeptide TPR-4; KEGG: mes:Meso_2493 short-chain dehydrogenase/reductase SDR; SMART: Transcription regulator LuxR, C-terminal.
  
     0.758
Psed_5501
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cwo:Cwoe_4573 short-chain dehydrogenase/reductase SDR.
  
     0.726
Psed_2113
KEGG: fri:FraEuI1c_0640 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR.
 
  
 0.629
Psed_1076
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mil:ML5_5255 short-chain dehydrogenase/reductase sdr.
 
 
 0.622
Psed_0508
Beta-ketoacyl-acyl-carrier-protein synthase II; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: nca:Noca_4118 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.570
Psed_2134
Beta-ketoacyl-acyl-carrier-protein synthase I; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
 0.567
Psed_3687
Short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_4323 short chain dehydrogenase/reductase family oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.565
Psed_2137
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S-malonyltransferase; SMART: Polyketide synthase, acyl transferase domain.
 
 
 0.558
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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