Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0200KEGG: amd:AMED_1510 MarR family transcriptional regulator. (119 aa)    
Predicted Functional Partners:
Psed_0201
KEGG: bcv:Bcav_4027 hypothetical protein.
 
     0.953
Psed_0198
PFAM: ABC-2 type transporter; KEGG: ske:Sked_36170 multidrug ABC transporter permease.
 
     0.936
Psed_0199
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: mil:ML5_0344 abc transporter related protein; SMART: ATPase, AAA+ type, core.
 
   
 0.868
Psed_0202
KEGG: gob:Gobs_1678 ATP-dependent transcriptional regulator, MalT-like, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal.
     
 0.486
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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