STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0421PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nfa:nfa21520 putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (273 aa)    
Predicted Functional Partners:
Psed_0905
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msm:MSMEG_6677 transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.720
Psed_1338
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pen:PSEEN2584 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.662
Psed_4595
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nda:Ndas_3924 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.643
Psed_3859
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: sen:SACE_0264 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.580
Psed_6252
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tcu:Tcur_1654 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.521
Psed_2197
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: fri:FraEuI1c_2012 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.481
Psed_0351
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: scb:SCAB_16931 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.464
Psed_5011
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: msp:Mspyr1_20300 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.440
Psed_2639
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: cwo:Cwoe_3024 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.430
Psed_1925
PFAM: HTH transcriptional regulator, LysR; KEGG: fri:FraEuI1c_3185 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.417
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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