STRINGSTRING
Psed_0421 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_0421" - LysR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0421LysR family transcriptional regulator (273 aa)    
Predicted Functional Partners:
Psed_0667
LysR family transcriptional regulator (296 aa)
   
          0.773
Psed_4050
LysR family transcriptional regulator (279 aa)
   
          0.741
Psed_0905
LysR family transcriptional regulator (309 aa)
   
          0.676
Psed_5051
LysR family transcriptional regulator (300 aa)
   
          0.621
Psed_1161
LysR family transcriptional regulator (309 aa)
   
          0.587
Psed_4595
LysR family transcriptional regulator (314 aa)
   
          0.559
Psed_3859
LysR family transcriptional regulator (304 aa)
   
          0.504
Psed_0792
LysR family transcriptional regulator (301 aa)
   
          0.484
Psed_0351
LysR family transcriptional regulator (287 aa)
   
          0.444
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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