Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Psed_0484PFAM: Abortive infection protein; KEGG: xce:Xcel_2718 abortive infection protein. (296 aa)    
Predicted Functional Partners:
Psed_0483
KEGG: mjl:Mjls_3508 hypothetical protein.
       0.481
Psed_0323
PFAM: ABC-2 type transporter; KEGG: aau:AAur_3042 putative ABC-type multidrug transport system, permease component.
 
  
 0.465
Psed_5248
PFAM: Nitroreductase-like; KEGG: mab:MAB_3310c oxygen-insensitive NAD(P)H nitroreductase.
 
  
 0.463
Psed_0482
Phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: amd:AMED_0557 integral membrane protein.
  
    0.427
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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