STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0603KEGG: kfl:Kfla_2555 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Psed_6430
KEGG: lch:Lcho_4113 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain.
  
 
 0.972
Psed_2324
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; PAC motif; Si [...]
  
 
 0.870
Psed_1573
SMART: Biotin carboxylase, C-terminal; manually curated; KEGG: gob:Gobs_2423 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; Carboxyl transferase.
   
 0.603
Psed_6171
KEGG: tcu:Tcur_2183 adenylate/guanylate cyclase with integral membrane sensor; PFAM: HAMP linker domain; Adenylyl cyclase class-3/4/guanylyl cyclase; SMART: HAMP linker domain; Adenylyl cyclase class-3/4/guanylyl cyclase.
   
 
 0.603
Psed_0548
Putative PAS/PAC sensor protein; TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; PAS fold-3; GAF; ATPase-like, ATP-binding domain; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gob:Gobs_0116 multi-sensor signal transduction histidine kinase; SMART: Protein phosphatase 2C-like; Signal transduction response regulator, receiver domain; PAC motif; GAF.
  
 
 0.600
Psed_2308
KEGG: tcu:Tcur_1126 response regulator receiver modulated serine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; SMART: Signal transduction response regulator, receiver domain; Protein phosphatase 2C-like.
  
 
 0.587
Psed_0604
Hypothetical protein; KEGG: ade:Adeh_0244 LigA.
       0.570
Psed_5115
2-oxoglutarate dehydrogenase, E1 subunit; SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ami:Amir_6253 alpha-ketoglutarate decarboxylase; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoacid dehydrogenase acyltransferase, catalytic domain.
  
 0.542
Psed_0435
Histidine kinase; KEGG: cwo:Cwoe_5360 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; CHASE3; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain.
   
 
 0.514
Psed_5342
Putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Phage shock domain; KEGG: amd:AMED_0787 two-component system sensor kinase.
  
 
 0.454
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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