STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0620GntR domain protein; KEGG: tfu:Tfu_1277 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR. (247 aa)    
Predicted Functional Partners:
Psed_3029
GntR domain protein; KEGG: dsh:Dshi_3048 GntR-family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.
  
     0.773
Psed_0621
KEGG: has:Halsa_0700 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
       0.744
Psed_0622
PFAM: Alpha/beta hydrolase fold-1; KEGG: pol:Bpro_1857 3-oxoadipate enol-lactonase.
  
    0.741
Psed_0623
KEGG: rop:ROP_29740 putative fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase.
     
 0.738
Psed_0624
PFAM: Luciferase-like, subgroup; KEGG: bts:Btus_1633 luciferase-like, subgroup.
       0.737
Psed_4636
KEGG: fri:FraEuI1c_4418 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.
 
  
 0.736
Psed_6264
KEGG: req:REQ_28550 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
 
  
 0.732
Psed_6457
KEGG: bpt:Bpet1649 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal.
 
  
 0.730
Psed_1342
KEGG: cwo:Cwoe_2765 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR.
 
  
 0.722
Psed_0625
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: hje:HacjB3_10950 hypothetical protein.
       0.719
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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