Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0652KEGG: amd:AMED_1255 hypothetical protein. (435 aa)    
Predicted Functional Partners:
Psed_1999
Transcriptional regulator, putative ATPase, winged helix family; KEGG: sro:Sros_0735 ATPase-like protein; PFAM: Bacterial transcriptional activator domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal.
  
     0.600
Psed_0653
KEGG: gob:Gobs_0179 stress responsive alpha-beta barrel domain-containing protein; PFAM: Stress responsive alpha-beta barrel; SMART: Stress responsive alpha-beta barrel.
       0.500
pheT
TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: amd:AMED_6050 phenylalanyl-tRNA synthetase beta chain; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.466
Psed_5592
KEGG: nml:Namu_4576 hypothetical protein.
  
     0.420
Psed_0668
KEGG: nml:Namu_3919 hypothetical protein.
  
    0.413
Psed_0655
KEGG: ami:Amir_2134 hypothetical protein.
       0.402
Psed_5534
Integrase family protein; PFAM: Integrase, catalytic core, phage; KEGG: amd:AMED_6149 integrase.
  
     0.402
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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