Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0664PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atu:Atu1400 phosphoglycerate dehydrogenase. (335 aa)    
Predicted Functional Partners:
Psed_0666
Galactonate dehydratase; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mlo:mll7085 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal.
 
     0.828
Psed_0665
KEGG: bmj:BMULJ_05466 maleylacetate reductase; PFAM: Alcohol dehydrogenase, iron-type.
   
   0.795
Psed_0663
PFAM: General substrate transporter; KEGG: rxy:Rxyl_1587 major facilitator transporter.
     
 0.784
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 
 0.721
Psed_2107
Methionine synthase; KEGG: tro:trd_1049 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; PFAM: Homocysteine S-methyltransferase; Methylenetetrahydrofolate reductase.
   
 
 0.561
Psed_0667
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_6318 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
     
 0.537
Psed_5058
UDP-glucose 4-epimerase; KEGG: mka:MK0724 nucleoside-diphosphate-sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase.
 
   
 0.521
Psed_6012
KEGG: rsa:RSal33209_0658 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII.
 
 
 0.475
Psed_1955
KEGG: sen:SACE_3998 putative glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
  
 
 0.459
Psed_0121
KEGG: mil:ML5_5510 hypothetical protein.
   
  0.457
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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