STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (731 aa)    
Predicted Functional Partners:
Psed_4106
Catalase; KEGG: sgr:SGR_1958 putative catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; Belongs to the catalase family.
    
 0.933
hisC
PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: sen:SACE_5777 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.906
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
     
 0.904
Psed_2930
PFAM: Aminotransferase, class I/classII; KEGG: sen:SACE_1581 hypothetical protein.
     
 0.904
Psed_5465
KEGG: ami:Amir_6643 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII.
     
 0.904
Psed_6012
KEGG: rsa:RSal33209_0658 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII.
     
 0.904
katG-2
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
  
 
0.902
Psed_3994
KEGG: ami:Amir_5685 aromatic-L-amino-acid decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase.
    
  0.902
katG-3
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
  
  
 
0.902
Psed_0216
TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; KEGG: gtn:GTNG_3160 putative aromatic compound hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase.
     
  0.900
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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