Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_0761KEGG: sen:SACE_3300 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Psed_1029
Hypothetical protein; KEGG: ami:Amir_0796 putative transmembrane anti-sigma factor.
 
 
 0.760
Psed_1819
KEGG: sen:SACE_6160 hypothetical protein.
  
     0.752
Psed_1861
KEGG: svi:Svir_11850 hypothetical protein.
  
     0.720
Psed_4713
KEGG: amd:AMED_2035 hypothetical protein.
  
     0.718
Psed_5313
KEGG: ami:Amir_6499 hypothetical protein.
  
     0.713
Psed_0964
KEGG: amd:AMED_8055 hypothetical protein.
  
     0.709
Psed_2040
KEGG: gob:Gobs_3193 putative transmembrane anti-sigma factor.
 
 
 
 0.709
Psed_2986
KEGG: amd:AMED_2572 hypothetical protein.
  
     0.693
Psed_5710
KEGG: amd:AMED_8566 hypothetical protein.
  
     0.693
Psed_2815
KEGG: rci:RRC32 hypothetical protein.
  
    0.661
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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