Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0807KEGG: ttr:Tter_1968 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, N-terminal; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain. (323 aa)    
Predicted Functional Partners:
Psed_3268
Transcriptional regulator, AraC family; KEGG: nfa:nfa43930 putative transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
 
 0.656
Psed_4541
Manually curated; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; KEGG: amd:AMED_0827 AraC family transcriptional regulator; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
 
 0.536
Psed_2750
KEGG: sen:SACE_4209 AraC family transcriptional regulator; PFAM: ThiJ/PfpI; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
  
     0.517
Psed_3263
KEGG: amd:AMED_4650 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
 
 0.500
Psed_0808
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: nca:Noca_1187 antibiotic biosynthesis monooxygenase.
       0.495
Psed_0809
PFAM: Domain of unknown function DUF59; Ribosomal protein L22/L17; KEGG: svi:Svir_16180 predicted metal-sulfur cluster biosynthetic enzyme.
       0.452
Psed_0667
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: smd:Smed_6318 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.447
Psed_3908
PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: ade:Adeh_2212 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.444
Psed_0780
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nca:Noca_1012 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.418
Psed_0815
PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0211 methane/phenol/toluene hydroxylase.
       0.415
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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