Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0902NADH dehydrogenase (ubiquinone); KEGG: ami:Amir_0688 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (491 aa)    
Predicted Functional Partners:
Psed_0901
PFAM: Uracil-DNA glycosylase-like; KEGG: rop:ROP_60020 putative uracil-DNA glycosylase.
     
 0.706
Psed_0900
PFAM: Ppx/GppA phosphatase; KEGG: sen:SACE_0843 Ppx/GppA family phosphatase.
       0.687
Psed_6363
KEGG: mva:Mvan_2367 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein.
   
 
 0.549
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 
 0.546
Psed_5077
KEGG: scb:SCAB_36181 glycerol phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.495
Psed_4553
Glycerol-3-phosphate dehydrogenase; KEGG: saq:Sare_2773 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase.
  
 
 0.491
Psed_0899
PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: mil:ML5_5311 acyl-CoA dehydrogenase domain-containing protein.
       0.472
Psed_1955
KEGG: sen:SACE_3998 putative glutamate synthase(NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal.
     
 0.470
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.470
Psed_5558
TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: svi:Svir_03270 NADH dehydrogenase subunit L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal.
  
  
 0.422
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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