Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Psed_0959ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; KEGG: amd:AMED_8939 putative secreted protein. (212 aa)    
Predicted Functional Partners:
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
    0.542
Psed_6132
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; KEGG: sen:SACE_0392 hypothetical protein; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
    
 0.538
Psed_6628
KEGG: sen:SACE_4158 hypothetical protein.
  
     0.462
Psed_5168
PFAM: Protein of unknown function DUF1707; KEGG: nml:Namu_4245 hypothetical protein.
  
   
 0.456
Psed_1890
Phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: scb:SCAB_23551 integral membrane protein.
 
    0.441
Psed_0960
Fructose-1,6-bisphosphatase, class II; TIGRFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase; KEGG: ami:Amir_0724 fructose 1,6-bisphosphatase II; PFAM: Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase.
       0.426
Psed_0482
Phosphoesterase PA-phosphatase related protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: amd:AMED_0557 integral membrane protein.
 
    0.419
Psed_0957
KEGG: ami:Amir_5145 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; SMART: Diguanylate phosphodiesterase, EAL domain.
     
 0.408
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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