STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1001ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ols:Olsu_1266 extracellular solute-binding protein family 5. (567 aa)    
Predicted Functional Partners:
Psed_1002
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sti:Sthe_2953 binding-protein-dependent transport systems inner membrane component.
 
 
 0.994
Psed_4088
SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: kfl:Kfla_3790 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.
 
 
 0.983
Psed_1003
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: gyc:GYMC61_1354 binding-protein-dependent transport systems inner membrane component.
  
 0.916
Psed_2187
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_3740 binding-protein-dependent transport systems inner membrane component.
 
  
 0.862
Psed_6014
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: sti:Sthe_3428 binding-protein-dependent transport systems inner membrane component.
 
  
 0.860
Psed_2372
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3107 binding-protein-dependent transport systems inner membrane component.
 
  
 0.855
Psed_4648
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120432 putative permease component of ABC transporter.
  
 0.853
Psed_4649
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: msm:MSMEG_1085 dipeptide transport system permease protein DppB.
 
  
 0.851
Psed_1353
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fri:FraEuI1c_3096 binding-protein-dependent transport systems inner membrane component.
  
 0.850
Psed_1354
ABC-type transporter, integral membrane subunit; PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: fal:FRAAL0338 ABC transporter oligopeptide permease.
 
  
 0.850
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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