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Psed_1001 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1001" - ABC transporter substrate-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1001ABC transporter substrate-binding protein (567 aa)    
Predicted Functional Partners:
Psed_1002
ABC transporter permease (310 aa)
 
  0.995
Psed_4088
Peptide ABC transporter ATPase (368 aa)
 
  0.980
Psed_1003
ABC transporter permease (323 aa)
  0.960
Psed_2372
ABC transporter permease (316 aa)
 
  0.933
Psed_2187
ABC transporter permease (316 aa)
 
  0.933
Psed_6014
ABC transporter permease (310 aa)
 
  0.933
Psed_4649
ABC transporter permease (314 aa)
 
  0.927
Psed_1354
ABC transporter permease (313 aa)
 
  0.924
Psed_4092
ABC transporter permease (331 aa)
  0.922
Psed_3695
ABC transporter permease (347 aa)
 
  0.918
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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