STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1007KEGG: amd:AMED_8021 hypothetical protein. (297 aa)    
Predicted Functional Partners:
Psed_1006
KEGG: amd:AMED_8022 hypothetical protein.
 
     0.856
mshB
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.
       0.787
Psed_1640
KEGG: sen:SACE_5910 hypothetical protein.
  
     0.676
Psed_1641
KEGG: sen:SACE_5909 hypothetical protein.
  
     0.611
Psed_2763
KEGG: fri:FraEuI1c_1805 hypothetical protein.
  
     0.559
Psed_1029
Hypothetical protein; KEGG: ami:Amir_0796 putative transmembrane anti-sigma factor.
  
     0.556
Psed_0430
KEGG: rop:ROP_49090 hypothetical protein.
  
     0.552
Psed_2133
KEGG: sen:SACE_1522 hypothetical protein.
  
     0.552
Psed_6560
KEGG: amd:AMED_1188 hypothetical protein.
  
     0.548
Psed_0801
KEGG: amd:AMED_8308 hypothetical protein.
 
     0.547
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.