Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1027PFAM: Methyltransferase type 11; KEGG: nml:Namu_2155 O-methyltransferase family 3. (184 aa)    
Predicted Functional Partners:
Psed_3234
KEGG: amt:Amet_1190 hypothetical protein.
  
  
 0.629
Psed_1028
KEGG: amd:AMED_1067 RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2.
     
 0.601
Psed_1029
Hypothetical protein; KEGG: ami:Amir_0796 putative transmembrane anti-sigma factor.
       0.526
Psed_5267
Protein of unknown function DUF692; PFAM: Uncharacterised protein family UPF0276; KEGG: mau:Micau_4298 hypothetical protein.
  
    0.447
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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