STRINGSTRING
Psed_1057 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1057" - Metallophosphoesterase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1057Metallophosphoesterase (215 aa)    
Predicted Functional Partners:
Psed_1056
Hypothetical protein (279 aa)
 
          0.972
Psed_1058
Type 11 methyltransferase (264 aa)
              0.649
Psed_1007
Hypothetical protein (297 aa)
   
          0.551
Psed_0142
RecB family nuclease (585 aa)
   
          0.528
Psed_1586
Hypothetical protein (933 aa)
   
          0.501
Psed_3857
Hypothetical protein (150 aa)
   
          0.467
Psed_3414
Hypothetical protein (264 aa)
   
          0.460
Psed_0631
Methane/phenol/toluene hydroxylase (395 aa)
   
          0.455
Psed_3111
Hemerythrin HHE cation binding domain-containing protein (199 aa)
   
          0.450
Psed_0589
Hypothetical protein (266 aa)
   
          0.450
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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