STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1057Metallophosphoesterase; PFAM: Metallo-dependent phosphatase; KEGG: amd:AMED_1094 phosphoesterase. (215 aa)    
Predicted Functional Partners:
Psed_1056
KEGG: amd:AMED_1093 hypothetical protein.
 
     0.964
Psed_1058
PFAM: Methyltransferase type 11; KEGG: mjl:Mjls_5458 methyltransferase type 12.
       0.556
Psed_0364
KEGG: ami:Amir_0216 hypothetical protein.
  
     0.516
Psed_0564
KEGG: svi:Svir_37150 hypothetical protein.
  
     0.512
Psed_0361
KEGG: ami:Amir_0216 hypothetical protein.
  
     0.479
Psed_6558
KEGG: sen:SACE_1599 hypothetical protein.
  
     0.462
Psed_3376
KEGG: nml:Namu_2294 hypothetical protein.
 
     0.432
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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