node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psed_1117 | whiB | Psed_1117 | Psed_1116 | Hypothetical protein. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.690 |
Psed_2978 | Psed_6102 | Psed_2978 | Psed_6102 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | 0.830 |
Psed_2978 | rbpA | Psed_2978 | Psed_3275 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.975 |
Psed_2978 | rpoA | Psed_2978 | Psed_5397 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
Psed_2978 | rpoB | Psed_2978 | Psed_5436 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
Psed_2978 | rpoC | Psed_2978 | Psed_5435 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
Psed_2978 | rpoZ | Psed_2978 | Psed_3519 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.974 |
Psed_2978 | whiB | Psed_2978 | Psed_1116 | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.697 |
Psed_3820 | rpoB | Psed_3820 | Psed_5436 | TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gbr:Gbro_2828 hemolysin A; SMART: RNA-binding S4. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.585 |
Psed_3820 | rpoC | Psed_3820 | Psed_5435 | TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gbr:Gbro_2828 hemolysin A; SMART: RNA-binding S4. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.642 |
Psed_3820 | whiB | Psed_3820 | Psed_1116 | TIGRFAM: Haemolysin A; PFAM: RNA-binding S4; Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: gbr:Gbro_2828 hemolysin A; SMART: RNA-binding S4. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.719 |
Psed_6102 | Psed_2978 | Psed_6102 | Psed_2978 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.830 |
Psed_6102 | rbpA | Psed_6102 | Psed_3275 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | 0.983 |
Psed_6102 | rpoA | Psed_6102 | Psed_5397 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.986 |
Psed_6102 | rpoB | Psed_6102 | Psed_5436 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
Psed_6102 | rpoC | Psed_6102 | Psed_5435 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
Psed_6102 | rpoZ | Psed_6102 | Psed_3519 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.972 |
Psed_6102 | sigA | Psed_6102 | Psed_3051 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.830 |
Psed_6102 | whiB | Psed_6102 | Psed_1116 | PFAM: Transcription factor CarD; KEGG: ami:Amir_0364 transcriptional regulator, CarD family. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.726 |
rbpA | Psed_2978 | Psed_3275 | Psed_2978 | Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family. | RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.975 |