STRINGSTRING
Psed_1122 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1122" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1122Hypothetical protein (969 aa)    
Predicted Functional Partners:
Psed_1121
Hypothetical protein (514 aa)
 
        0.753
Psed_3492
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (85 aa)
   
          0.598
Psed_5358
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (104 aa)
   
          0.596
Psed_4736
Hypothetical protein (107 aa)
   
          0.570
Psed_1891
Aminopeptidase (863 aa)
   
        0.558
Psed_5215
Cell envelope-related transcriptional attenuator (541 aa)
 
        0.558
Psed_5153
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (83 aa)
   
          0.538
Psed_5031
Cell envelope-related transcriptional attenuator (495 aa)
 
        0.533
Psed_5182
Lipoprotein LpqB, beta-propeller domain-containing protein (570 aa)
   
     
  0.515
Psed_5598
PDZ/DHR/GLGF domain-containing protein (355 aa)
 
        0.500
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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