STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1137PFAM: Ion transport 2; KEGG: sma:SAV_3759 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Psed_1136
PFAM: Protein of unknown function DUF2252; KEGG: nml:Namu_2955 hypothetical protein.
 
     0.618
Psed_5986
KEGG: amd:AMED_3902 integral membrane protein.
 
     0.596
Psed_2047
KEGG: nml:Namu_1376 hypothetical protein.
 
     0.582
Psed_0067
PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: nfa:nfa32860 hypothetical protein.
 
     0.542
Psed_4268
PFAM: Uncharacterised conserved protein UCP014873, membrane associated; KEGG: nfa:nfa32860 hypothetical protein.
 
     0.533
Psed_4261
KEGG: sen:SACE_3236 integral membrane protein.
 
     0.511
Psed_5987
Hypothetical protein; KEGG: sen:SACE_2415 integral membrane protein.
 
     0.489
Psed_4427
Regulatory protein TetR; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: sna:Snas_2833 transcriptional regulator, TetR family.
  
     0.436
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.