STRINGSTRING
Psed_1137 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_1137" - Ion transport 2 domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_1137Ion transport 2 domain-containing protein (185 aa)    
Predicted Functional Partners:
Psed_2645
Hypothetical protein (316 aa)
   
          0.733
Psed_5986
Hypothetical protein (144 aa)
   
          0.690
Psed_5992
Ribonuclease BN (359 aa)
   
          0.687
Psed_0486
Glyoxalase/bleomycin resistance protein/dioxygenase (208 aa)
   
          0.681
Psed_5987
Hypothetical protein (157 aa)
   
          0.667
Psed_4261
Hypothetical protein (139 aa)
   
          0.650
Psed_1136
Hypothetical protein (491 aa)
 
          0.619
Psed_5451
Hypothetical protein (323 aa)
   
          0.571
Psed_3107
Hypothetical protein (306 aa)
   
          0.538
Psed_5218
Ribonuclease BN (291 aa)
   
          0.527
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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